Seasons Batch Fix Question

Hi. I recently did the batch fix from the latest s4s and it looks as though it only fixed  a few cc in my subfolders in my mods folder and not all. From what I understand, it is supposed to do all hair, but mostly did toddler hair and some unisex hair. It failed to scan majority of my subfolders and when I went to try it again, it just gives me the same result txt file saying that it couldn't fix two items and 3000+ didn't need fixing. But now, majority of the cc hair is missing or has the question mark. I need some help understanding why this has happened. Thanks in advance!